Microarray data assembler

cDNA Microarray Data Normalization

ABySS: a parallel assembler for short read sequence data.

Widespread adoption of massively parallel deoxyribonucleic acid (DNA) sequencing instruments has prompted the recent development of de novo short read assembly algorithms. A common shortcoming of the available tools is their inability to efficiently assemble vast amounts of data generated from large-scale sequencing projects, such as the sequencing of individual human genomes to catalog natural...

Cognitive Assembler

The cognitive assembler is an analogy to the computer assembly language. It is a model to describe an elementary level of instructions in a brain. It analyzes the behavior of a brain but in a higher level than neuronal, it wraps details of neuronal computations into symbolic instructions. We will try to use this cognitive assembler to more closely and finely describe the behavior of a brain obs...

Meta-IDBA: a de Novo assembler for metagenomic data

MOTIVATION Next-generation sequencing techniques allow us to generate reads from a microbial environment in order to analyze the microbial community. However, assembling of a set of mixed reads from different species to form contigs is a bottleneck of metagenomic research. Although there are many assemblers for assembling reads from a single genome, there are no assemblers for assembling reads ...

SPA: a short peptide assembler for metagenomic data

The metagenomic paradigm allows for an understanding of the metabolic and functional potential of microbes in a community via a study of their proteins. The substrate for protein identification is either the set of individual nucleotide reads generated from metagenomic samples or the set of contig sequences produced by assembling these reads. However, a read-based strategy using reads generated...